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HIV Transcription Elongation
SuperPath
Pathway network
for
HIV Transcription Elongation
SuperPath
24
Pathways
in the
HIV Transcription Elongation
SuperPath
RNA Pol II CTD phosphorylation and interaction with CE during HIV infection
HIV elongation arrest and recovery
Pausing and recovery of Tat-mediated HIV elongation
Pausing and recovery of HIV elongation
Formation of HIV-1 elongation complex containing HIV-1 Tat
RNA Polymerase II Transcription Elongation
Abortive elongation of HIV-1 transcript in the absence of Tat
MicroRNA (miRNA) biogenesis
Transcription of the HIV genome
miRNA Biogenesis
TP53 Regulates Transcription of DNA Repair Genes
RNA polymerase II transcribes snRNA genes
Formation of RNA Pol II elongation complex
mRNA Capping
Formation of HIV elongation complex in the absence of HIV Tat
FGFR2 alternative splicing
RNA Polymerase II Pre-transcription Events
RNA Pol II CTD phosphorylation and interaction with CE
RNA Polymerase II Transcription
Tat-mediated HIV elongation arrest and recovery
Formation of the HIV-1 Early Elongation Complex
Tat-mediated elongation of the HIV-1 transcript
Formation of the Early Elongation Complex
HIV Transcription Elongation
242
Genes
in the
HIV Transcription Elongation
SuperPath
POLR2A
POLR2B
POLR2C
POLR2D
POLR2E
POLR2F
POLR2G
POLR2H
POLR2I
POLR2J
POLR2K
POLR2L
GTF2F1
GTF2F2
SUPT5H
SUPT4H1
NELFA
NELFE
CTDP1
NELFB
NELFCD
MIR943
MIR1236
CDK7
CCNH
ERCC2
ERCC3
GTF2H1
GTF2H2
GTF2H3
GTF2H4
MNAT1
GTF2H5
CCNT1
CDK9
ELL
MIR2861
MIR3960
NCBP1
NCBP2
SSRP1
TCEA1
ELOC
ELOB
ELOA
SUPT16H
ELOA2
ELOA3
ELOA3B
ELOA3D
CCNT2
CCNK
RNMT
RNGTT
MLLT1
MLLT3
SUPT6H
CTR9
RTF1
AFF4
PAF1
IWS1
EAF2
CDC73
WDR61
EAF1
LEO1
GTF2A1
GTF2A2
GTF2B
GTF2E1
GTF2E2
TAF5
TAF6
TAF9
TAF11
TAF13
TBP
TAF1
TAF2
TAF4
TAF4B
TAF7
TAF10
TAF12
TAF9B
TAF7L
TAF3
TAF1L
MIR1257
RAN
TARBP2
DICER1
DROSHA
DGCR8
XPO5
MIR1306
MIR3618
PRKRA
AGO1
AGO2
AGO3
AGO4
ATM
ATR
BRCA1
CHEK1
ATF2
DDB2
FANCC
FANCD2
FOS
JUN
MLH1
MSH2
PMS2
RAD51D
TP53
CDK13
MDC1
CDK12
FANCI
POU2F1
POU2F2
SNAPC1
SNAPC2
SNAPC3
SNAPC4
SP1
ZNF143
SNAPC5
ELL2
RPRD2
ICE1
INTS7
INTS1
INTS6
SRRT
PHAX
INTS11
INTS10
RPRD1A
INTS8
INTS13
INTS9
INTS12
INTS2
RPRD1B
NABP1
INTS3
NABP2
ICE2
RPAP2
ELL3
INTS5
INTS14
ZC3H8
INTS4
TAF8
MIR6727
HNRNPA1
HNRNPF
HNRNPH1
HNRNPM
PTBP1
TIA1
TIAL1
RBFOX2
ESRP1
ESRP2
MIR4745
MIR6773
CSTF1
CSTF2
CSTF3
MAGOH
SRSF1
SRSF2
SRSF3
SRSF4
SRSF5
SRSF6
SRSF7
SNRPB
SNRPD3
SNRPE
SNRPF
SNRPG
U2AF1
SLBP
DDX39B
PABPN1
SYMPK
THOC5
SRSF9
SRSF11
EIF4A3
DHX38
ZC3H11A
RBM8A
THOC1
ALYREF
DDX39A
SRRM1
SLU7
CPSF4
PAPOLA
RNPS1
CLP1
NUDT21
U2AF2
CASC3
CSTF2T
ZNF473
CHTOP
CPSF1
LUZP4
CDC40
PCF11
CPSF3
CPSF2
MAGOHB
WDR33
THOC2
UPF3B
THOC6
CPSF7
THOC7
FIP1L1
FYTTD1
POLDIP3
THOC3
SARNP
LSM10
LSM11
U2AF1L4
MIR636
MIR939
MIR1234
MIR6849
MIR6866
U2AF1L5
*Darkness represents the genes rank within the SuperPath, via the multiplicity of each gene in the constituent pathways.
STRING interaction network
for
HIV Transcription Elongation
SuperPath